Membres

Mourad Elloumi

 Identité:

Mourad Elloumi

Maître de conférences en Informatique 

à la Faculté des Sciences Economiques et de Gestion de Tunis

Membre de l'Unité de Recherche UTIC

E-mail : Mourad.Elloumi@fsegt.rnu.tn

Titres universitaires:

• Habilitation Universitaire en Informatique (Ecole Nationale des Sciences de l’Informatique (ENSI), Université de Manouba (UM)) : 2003.

Sujet : Algorithmes d’Analyse de Chaînes de Caractères Codant des Macromolécules Biologiques.

• Doctorat en Informatique (Université d’Aix-Marseille III, France) : 1994. Préparé au sein du Groupe Représentation et Traitement des Connaissances (GRTC) / Centre National de la Recherche Scientifique (CNRS), Marseille, France.

Sujet : Analyse de Chaînes de Caractères Codant des Macromolécules Biologiques : Très Honorable.

• Diplôme d’Etudes Approfondies (DEA) en Automatique et Informatique (Faculté des Sciences et Techniques de Saint Jérôme, Université d’Aix-Marseille III, France) : 1989

• Ingénieur Principal en Informatique (Faculté des Sciences de Tunis (FST), Université de Tunis-El Manar (UTM)) : 1988

• Diplôme Universitaire des Études Supérieures (FST, UTM) : 1984

Thèmes de recherche:

• Algorithmique

• Biologie Moléculaire Computationelle (Computational Molecular Biology)

• Extraction de Connaissances et Fouille de Données (Knowledge Discovery and Data Mining)

Publications:

1. Habilitation

  • M. Elloumi, Algorithmes d’Analyse de Chaînes de Caractères Codant des Macromolécules Biologiques, Mémoire d’Habilitation Universitaire en Informatique, ENSI, UM, Octobre 2003.

2. Doctorat

  • M. Elloumi, Analyse de Chaînes de Caractères Codant des Macromolécules Biologiques, Mémoire de Thèse de Doctorat en Informatique, Université d’Aix-Marseille III, France, Juin 1994.

3. DEA

  • M. Elloumi, Description Structurelle d’une Chaîne et Généralisation d’un Ensemble de Chaînes, Mémoire de DEA en Automatique et Informatique, Université d'Aix-Marseille III, France, Juin 1989.

4. Articles dans des Revues Internationales

  • [El Faleh et al. 10b] : T. El Faleh, Th. Lecroq, M. Elloumi, SMS-Forbid and SMS-H-Forbid: Two Improved Motif Finding Algorithms with Wildcards, Journal of Computational Biology, Mary Ann Liebert, Inc., New Rochelle,USA (Publisher) : (Soumis, Mai 2010).
  • [Ayadi et al. 10b] : W. Ayadi, M. Elloumi, J. K. Hao, BiMine+:An efficient Algorithm for Discovering Relevant Biclusters of DNA Microarray Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, IEEE Computer Society Press, Washington D.C., USA (Publisher) : (Soumis, Avril 2010).
  • [Ayadi et al. 10a] : W. Ayadi, M. Elloumi, J. K. Hao, BicFinder: A Biclustering Algorithm for Microarray Data Analysis, Knowledge and Information Systems, An International Journal, Springer-Verlag London Ltd., London, United Kingdom (Publisher) : (Accepté, Octobre 2010).
  • [Ayadi et al. 09] : W. Ayadi, M. Elloumi, J. K. Hao, A Biclustering Algorithm Based on a Bicluster Enumeration Tree: Application to DNA Microarray Data, BioData Mining Journal, 2:9, Springer Science+Business Media, Berlin, Germany (Publish.) : (Décembre 2009).
  • [Elloumi et Mokaddem 08b] : M. Elloumi, A. Mokaddem, A Heuristic Algorithm for the N-LCS Problem, Journal of Applied Mathematics, Statistics and Informatics (JAMSI), Vol. 4, N°1, The University of Saint Cyril and Metodius, Trnava, Slovak Republic (Publisher) : (Mai 2008), p17-27.
  • [Mhamdi et al. 06] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A Compromise between N-gram Length and Classifier Characteristics for Protein Classification, International Journal of Computer Science and Network Security, Vol. 6 No.4 : (Avril 2006). 
  •  [Elloumi et Maddouri 05] : M. Elloumi, M. Maddouri, New Voting Strategies Designed for the Classification of Nucleic Sequences, Knowledge and Information Systems, An International Journal, Vol. 8, N°1, Springer-Verlag London Ltd., London, United Kingdom (Publisher) : (Juillet 2005).

 

  • [Maddouri et Elloumi 04] : M. Maddouri, M. Elloumi, Encoding of Primary Structures of Biological Macromolecules within a Data Mining Perspective, Journal of Computer Science and Technology, Vol. 19, N°1, Special Issue on Bioinformatics, Chinese Academy of Sciences, Beijing, China (Publisher) : (Janvier 2004).
  • [Maddouri et Elloumi 02] : M. Maddouri, M. Elloumi, A Data Mining Approach based on Machine Learning Techniques to Classify Biological Sequences, Knowledge Based Systems Journal, Vol. 15, Issue 4, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (Mai 2002), p217-223.
  •  [Elloumi 01b] : M. Elloumi, Algorithms for the Prediction of Secondary Structures of RNA Macromolecules, Journal of Computational Technologies, Vol. 6, N°5, Siberian Branch, Russian Academy of Sciences, Novosibirsk, Russia (Publisher) : (Octobre 2001), p3-23.
  • [Elloumi 00d] : M. Elloumi, Algorithms for the Shortest Exact Common Superstring Problem, South African Computer Journal, N°26, Computer Society of South Africa, Johannesbourg, South Africa (Publisher) : (Novembre 2000), p22-26.
  • [Elloumi 98b] : M. Elloumi, Comparison of Strings Belonging to the Same Family, Information Sciences, An International Journal, Vol. 111, Issue 1-4, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (Novembre 1998), p49-63.

5. Édition et Co- Édition d’Actes et de Numéros Spéciaux

  • Édition du Vol. 15, Issue 4, de la Revue Knowledge Based Systems, Numéro Spécial intitulé Biological Knowledge Discovery and Data Mining, Elsevier Publishing Co., Amsterdam, North-Holland (Publisher) : (Mai 2002).
  • Co-Édition des Proceedings of The 2001 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'01 (Las Vegas, Nevada, U.S.A.) : (Juin 2001).

6. Communications dans des Conférences Internationales

  • [Ayadi et al. 10] : W. Ayadi, M. Elloumi, J. K. Hao, Iterated Local Search for Biclustering of Microarray Data, in Proc. The 5th Pattern Recognition in Bioinformatics, PRIB’10 (Nijmegen, The Netherlands), Lecture Notes in BioInformatics (LNBI), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (September 2010).
  • [Elloumi et al. 10] : M. Elloumi, F. Mhamdi, W. Trabelsi, Processus d’Extraction de Motifs Biologiques Pertinents, in Proc. 17ème Rencontres de la Société Francophone de Classification, SFC’10 (Saint Denis, La Réunion, France) : (Juin 2010).
  • [El Faleh et al. 10a] : T. El Faleh, Th. Lecroq, M. Elloumi, SMS-Forbid: An Efficient Algorithm for Simple Motif Problem, in Proc. 2nd International Conference on Bioinformatics and Computational Biology, BICoB’10 (Honolulu, Hawaii, USA) : (Mars 2010).
  • [Mhamdi et Elloumi 09] : F. Mhamdi, M. Elloumi, lgorithms for Proteins Biclustering, in Proc. The 2009 IEEE International Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’09, (Bradford, UK), IEEE Computer Society Press (Publish.) : (Mai 2009).
  • [Elloumi et Mnif 09b] : M. Elloumi, A. Mnif, New Heuristic Algorithms for the Optimization Vertex Bipartization Problem, in Proc. The 45th Applied Mathematics Conference, ANZIAM’09 (Caloundra, Australia) : (Février 2009).
  • [Elloumi et Mnif 09a] : M. Elloumi, A. Mnif, New Minimum Fragment Removal Heuristic Algorithms Based on a Coloring Approach, in Proc. The International Conference on Advanced Computer Control, ICACC’09 (Singapore) : (Janvier 2009).
  • [Mhamdi et Elloumi 08b] : F. Mhamdi, M. Elloumi, Approaches of Feature Construction from Biological Sequences, in Proc. The 3rdPattern Recognition in Bioinformatics, PRIB’08 (Melbourne, Australia ), Lecture Notes in BioInformatics (LNBI), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Octobre 2008).
  • [Elloumi et Mokaddem 08c] : M. Elloumi, A. Mokaddem, An Algorithm for Multiple and Global Alignments, in Proc. The 2nd International Conference on Bioinformatics Research and Development, BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).
  • [Tahri et Elloumi 08] : H. Tahri, M. Elloumi, A New Approximation Algorithm for the Minimum Fragment Removal Problem, in Proc. The 2nd International Conference on Bioinformatics Research and Development, BIRD’08 (Vienna, Austria), Communications in Computer and Information Science (CCIS), Springer-Verlag, Berlin, Heidelberg, Germany (Publish.) : (Juillet 2008).
  • [Mhamdi et Elloumi 08] : F. Mhamdi, M. Elloumi, A New Survey on Knowledge Discovery and Data Mining, in Proc. The Second IEEE International Conference on Research Challenges in Information Science, IEEE-RCIS’08 (Marrakech, Morocco) : (Juin 2008).
  • [Elloumi et Mokaddem 08a] : M. Elloumi, A. Mokaddem, An Approximation Algorithm for the N-LCS Problem, in The 2nd International Conference on Bioinformatics and Biomedical Engineering, iCBBE’08 (Shanghai, China), IEEE Press (Publish.) : (Mai 2008).
  • [Elloumi et Mokaddem 08b] : M. Elloumi, A. Mokaddem, An Algorithm for Multiple and Global Alignments, in The 2008 IEEE International Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’08 (GinoWan, Okinawa, Japan),IEEE CS Press (Publish.) : (Mars 2008).
  • [Elloumi et Mokaddem 08c] : M. Elloumi, A. Mokaddem, A Dynamic Programming Algorithm for the Approximate String-Matching Problem, in The 2008 IEEEInternational Workshop on Bioinformatics and Life Science Modeling and Computing, BLSMC’08 (GinoWan, Okinawa, Japan), IEEE CS Press (Publish.) : (Mars 2008).
  • [Mhamdi et al. 07] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Une Approche Hiérarchique d’Extraction de Motifs pour la Classification de Protéines, in Proc. Conférence d'Apprentissage Automatique, CAp'07 (Grenoble, France) : (Juillet 2007).
  • [Mhamdi et al. 06b] : F. Mhamdi, R. Rakotomalala, M. Elloumi, A Hierarchical N-Grams Extraction Approach for Classification Problem, in Proc. The International Conference on Signal-Image Technology & Internet–Based Systems, SITIS'06 (Tunis, Tunisia), Springer-Verlag, Heidelberg, Germany (Eds.) :(Décembre 2006).
  • [Elloumi 06] : M. Elloumi, Algorithms for Processing Biological Sequences, in Proc. 1st Tunisian-German Workshop on Bioinformatics (Borj-Cédria, Tunisia) : (Septembre 2006).
  • [Tahri et Elloumi 06] : H. Tahri, M. Elloumi, Algorithms for the Single Individual Haplotyping Problem, in Proc. 1st Tunisian-German Workshop on Bioinformatics (Borj-Cédria, Tunisia) : (Septembre 2006).
  • [Mhamdi et al. 06a] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Extraction et Sélection des n-grammes pour le Classement des Protéines, in Proc. Atelier Extraction et Gestion des Connaissances Appliquées aux Données Biologiques, BIO-EGC'06 (Lille, France) : (Janvier 2006).
  • [Rakotomalala et al. 05] : R. Rakotomalala, F. Mhamdi, M. Elloumi, Hybrid Feature Ranking for Proteins Classification, in Proc. The First International Conference on Advanced Data Mining and Applications, ADMA'05 (Wuhan, China), Lecture Notes in Computer Science, Springer-Verlag, Heidelberg, Germany (Eds.) : (Juillet 2005).
  • [Mhamdi et al. 05b] : F. Mhamdi, M. Maddouri, M. Elloumi, Extraction et Comparaison entre N-Grammes et Descripteurs Discriminants pour la Classification de Protéines, in Proc. Conférence d'Apprentissage Automatique, CAp'05 (Nice, France) : (Mai 2005).
  • [Mhamdi et al. 05a] : F. Mhamdi, R. Rakotomalala, M. Elloumi, Feature Ranking for Protein Classification, in Proc. 4th International Conference on Computer Recognition Systems, CORES'05 (Leszno, Poland), Springer-Verlag, Heidelberg, Germany (Eds.) :  (Mai 2005).
  • [Mhamdi et al. 04b] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Discriminant Descriptors Extraction for Proteins Classification, in Proc. Neuro-Computing and Evolving Intelligence 2004, NCEI’04 (Auckland, New Zealand) : (Décembre 2004).
  • [Mhamdi et al. 04a] : F. Mhamdi, M. Elloumi, R. Rakotomalala, Textmining, Feature Selection and Datamining for Protein Classification, in Proc. IEEE International Conference on Information & Communication Technologies from Theory to Applications, IEEE-ICTTA'04 (Damascus, Syria) : (Avril 2004).
  • [Elloumi et Maddouri 03] : M. Elloumi, M. Maddouri, A Data Mining Approach based on Vote Strategies to Classify Biological Sequences, in Proc. Workshop on Discrete Mathematics and Data Mining (DM&DM), Third Society for Industrial and Applied Mathematics (SIAM) International Conference on Data Mining (San Francisco, California, U.S.A.) : (Mai 2003).
  • [Maddouri et Elloumi 01] : M. Maddouri, M. Elloumi, Classification of Biological Sequences by using a Data Mining Approach, in Proc. of The 2001 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'01 (Las Vegas, Nevada, U.S.A.) : (Juin 2001).
  • [Elloumi 01a] : M. Elloumi, An Algorithm for the Approximate String-Matching Problem, in Proc. of Atlantic Symposium on Computational Biology, Genome Information Systems & Technology, CBGI'01 (Durham, North Carolina, U.S.A.) : (Mars 2001).
  • [Elloumi 00c] : M. Elloumi, Algorithms for the Shortest Approximate Common Superstring Problem, in Proc. of The 1st Society for Industrial and Applied Mathematics Conference on Computational Science and Engineering, SIAM-CS&I'00 (Washington D.C., U.S.A.) : (Septembre 2000).
  • [Elloumi 00b] : M. Elloumi, Algorithms for the DNA Sequence Assembly Problem, in Proc. of 4th World Conference on Systematics, Cybernetics and Informatics, and 6th International Conference on Information Systems Analysis and Synthesis, SCI2000/ISAS2000, Session : SCI in Biology and Medicine (Orlando, Florida, U.S.A.), International Institute of Informatics and Systemics, Illinois, U.S.A. (Eds.) : (Juillet 2000).
  • [Elloumi 00a] : M. Elloumi, DNA Sequence Assembly Algorithms Based on Clustering Approaches, in Proc. of The 2000 International Conference on Mathematics and Engineering Techniques in Medicine and Biological Sciences, METMBS'00, Vol. II (Las Vegas, Nevada, U.S.A.) : (Juin 2000), p717-723.
  • [Elloumi et Maddouri 00] : M. Elloumi, M. Maddouri, Discrimination Between Two Families of Strings: Application to Classification of Primary Structures of Biological Macromolecules, in Proc. of 2nd International Workshop on Biological Informatics, BIW'2000, Vol. II (Atlantic City, New Jersey, U.S.A.) : (Février 2000), p819-822.
  • [Barouni et Elloumi 00] : A. Barouni, M. Elloumi, An Algorithm for Drawing Normal Representation of RNA Secondary Structures, in Proc. of 2nd International Workshop on Biological Informatics, BIW'2000 Vol. II (Atlantic City, New Jersey, U.S.A.) : (Février 2000), p766-769.
  • [Elloumi et Kaâbi 99] : M. Elloumi, S. Kaâbi, Exact and Approximation Algorithms for the DNA Sequence Assembly Problem, in Proc. of 3rd World Conference on Systematics, Cybernetics and Informatics, and 5th International Conference on Information Systems Analysis and Synthesis, SCI'99/ISAS'99, Session : SCI in Biology and Medicine, Vol. 8 (Orlando, Florida, U.S.A.), International Institute of Informatics and Systemics, Illinois, U.S.A. (Eds.) : (Juillet 1999), p152-157.
  • [Elloumi et Kaâbi 98] : M. Elloumi, S. Kaâbi, DNA Sequence Assembly Algorithms, in Proc. of 2nd Workshop on Intelligent Control Systems, IC'98 (North Carolina, U.S.A.) : (Octobre 1998).
  • [Elloumi 98a] : M. Elloumi, New Algorithms to Predict Secondary Structures of RNA Macromolecules, in Proc. of 11th International Conference on Industrial and Engineering Applications of Artificial Intelligence and Expert Systems, IEA/AIE'98, Vol. 1 (Benicassim, Castellon, Spain), Springer Lecture Notes in Artificial Intelligence, Springer-Verlag, New York, U.S.A. (Eds.) : (Juin 1998), p864-875.

7. Chapitres dans un Livre

  • [Ayadi et Elloumi 10] : W. Ayadi, M. Elloumi, Biclustering of Microarray Data, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey, USA (Publish.) : (Octobre 2010).
  • [El Faleh et al. 10c] : T. El Faleh, M. Elloumi, h. Lecroq, Motif Finding Algorithms in Biological Sequences, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey, USA (Publish.) : (Octobre 2010).
  • [Mokaddem et Elloumi 10] : A. Mokaddem, M. Elloumi, Algorithms for the Alignment of Biological Sequences, in Algorithms in Computational Molecular Biology : Techniques, Approaches and Applications, Wiley Book Series on Bioinformatics : Computational Techniques and Engineering, Wiley-Blackwell, John Wiley & Sons Ltd., New Jersey, USA (Publish.) : (Octobre 2010).

Membres